Publications

Peer Reviewed Publications:

2018                Aronsen GP, Fehren-Schmitz L, Krigbaum J, Kamenov G, Conlogue G, Warinner C, Ozga AT, Sankaranarayanan K, Griego A, DeLuca D, Eckels H, Bycieweicz R, Grurich T, Pellatier N, Brownlee S, Marichal A, Williamson K, Tonoike Y, Bellantoni NI. The Dead Shall Be Raised: Multidisciplinary Analysis of 19th Century Human Skeletons Reveals Complex New England Immigrant Socioeconomic History and Identity. Targeted journal: PLOS One.

2018                Ziesemer KA, Ramos-Madrigal J, Mann AE, Brandt BW, Sankaranarayanan K, Ozga AT, Hoogland M, Garcia DCS, Frohlich B, Milner G, Stone AC, Aldernderfer M, Lewis CM, Hofman CL, Warinner C, Schroeder H. The efficacy of whole genome capture on ancient dental calculus and dentin. Targeted Journal: American Journal of Physical Anthropology.

2018                Mann AE, Sabin S, Ziesemer K, Vågene A, Schroeder H, Ozga AT, Sankaranarayanan K, Hofman CA, Yates JF, Garcia DS, Frohlich B, Aldenderfer M, Hoogland M, Read C, Krause J, Hofman C, Bos K, Warinner C. Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific Reports.

2018                Nieves-Colon MA, Ozga AT, Pestle WJ, Cucina A, Tiesler V, Stanton T, Stone AC. Comparison of two ancient DNA extraction protocols for skeletal remains from tropical environments. American Journal of Physical Anthropology doi: 10.1002/ajpa.23472.

2016                Ozga AT, Sankaranarayanan K, Tito RY, Obregon-Tito AJ, Foster M, Tallbull G, Spicer P, Warinner C, Lewis Jr. CM. Oral microbiome diversity among the Cheyenne and Arapaho of Oklahoma. American Journal of Physical Anthropology 161: 321-327. doi: 10.1002/ajpa.23033

2016                Jeong C, Ozga AT, Witonsky D, Malmstrom H, Edlund H, Hofman CA, Hagan R, Jakobsson M, Lewis Jr. CM, Aldenderfer M, Di Rienzo A, Warinner CW. Long term genetic stability and a high altitude East Asian origin for the peoples of the high valleys of the Himalayan arc. PNAS 113, 27: 7485-7490. doi: 10.1073/pnas.1520844113

2016                Ozga AT, Nieves-Colon MA, Honap TP, Sankaranarayanan K, Hofman C, Milner G, Lewis Jr. CM, Stone AC, Warinner CW. Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus. American Journal of Physical Anthropology 160, 2: 220-228. doi:10.1002/ajpa.22960

2015                Ozga AT, Tito RY, Kemp BM, Matternes HB, Obregon-Tito AJ, Neal L, Lewis CM. Ancestry Determination from an Unmarked Georgia Cemetery using Ancient DNA Analysis. Human Biology 87.2, Spring 2015. doi:10.13110/humanbiology.87.2.0109

2015                Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Xu ZZ, Van Truren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, Guija-Poma E, Troncoso-Corzo L, Amiel J, Warinner C, Ozga AT, Lewis CM. Subsistence strategies in traditional societies distinguish gut microbiomes. Nature Communications. 6, 6505. doi:10.1038/ncomms7505

2015                O’Neal L, Obregon-Tito AJ, Tito RY, Ozga AT, Polo SI, Lewis CM. Clostridium amazonense sp. nov. an obligately anaerobic bacterium isolated from a remote Amazonian community in Peru. Anaerobe. October 2015. 35(B): 33-37. doi:10.1016/j.anaerobe.2015.06.005

2015                Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar Garcia DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C. Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Scientific Reports 5:16498. doi:10.1038/srep16498

2015                Sankaranarayanan K, Ozga AT, Warinner C, Tito RY, Obregon-Tito AJ, Xu J, Gaffney PM, Foster M, Tallbull G, Spicer P, Lewis CM. Gut microbiome diversity among the Cheyenne & Arapaho of Oklahoma. Current Biology 25: 1-9. doi:10.1016/j.cub.2015.10.060

In Press Book Chapters:

2019                Stone A, Ozga AT. Chapter 8: Ancient DNA in the study of ancient disease. Ed. Buikstra, Jane. Identification of Pathological Conditions in Human Skeletal Remains.

2019                Warinner C, Ozga AT, Radini A, Sankaranarayanan K, Lewis Jr. CM. Chapter 6: Genetic and Microscopic Analysis of Human Dental Calculus from Swift Water Place, Alaska. Ed: Anderson, D. Northwest Alaska at the Threshold of European Contact: Life at Swift Water Place

Conference Presentations:

 2019                Webster TH, Ozga AT, Gilby IC, Wilson Sayres MA, Li Y, Hahn BH, Nockerts  RS, Wilson MA, Pusey AE, Stone AC. Noninvasive genomics of Gombe chimpanzees: evaluating methods for wild primate population genomics. American Association of Physical Anthropologists, Cleveland, OH. (Forthcoming)

2019                Ozga AT and Stone AC. Adventures in museumomics: The use of next generation sequencing to uncover great ape host and microbial genomes. American Association of Physical Anthropologists, Cleveland, OH. (Forthcoming)

2019                Ozga AT, Webster TH, Gilby IC, Nockerts R, Wilson MA, Pusey AE, Stone AC.  Recent history of Gombe chimpanzees through ancient DNA analysis in Degraded DNA and Paleogenomics Workshop at Plant and Animal Genome XXVII Conference, San Diego, CA.

2019                Dolan S, and Ozga AT. New Insights into Turkey Domestication in the Mimbres Valley using Mitochondrial DNA analysis. Southern Southwest Archaeological Conference. Phoenix. AZ.

2018                Dolan S, and Ozga AT. Turkey Domestication and Iconography during the Mimbres Classic Period. Mongollon Archaeology Conference. Las Cruces, NM.

2018                Ozga AT and Stone AC. Profiles of microbial diversity and function within museum dental calculus samples extracted from wild great apes. International Symposium on Biomolecular Archaeology 8, Jena, Germany.

2018                Ozga AT, Trumble B, Hopkins C, Schwartz M, Stieglitz J, Kaplan H, Gurven M, and Stone AC. Oral microbiome variation among the Tsimane of Bolivia and metropolitan Americans. International Society of Evolution, Medicine, and Public Health. Salt Lake City, UT.

2018                Ozga AT, Nockerts R, Wilson, M, Gilby IC, Pusey A, Stone AC. Oral microbiome variation in chimpanzees from Gombe National Park. American Association of Physical Anthropologists annual meeting. Austin, TX.

2018                Mann A, Sabin S, Ziesemer K, Vagene A, Schroeder H, Ozga AT,                         Sankaranarayanan K, Hofman CA, Yates JF, Garcia DS, Frohlich B, Aldenderfer M, Hoogland M, Read C, Krause J, Hofman C, Bos K, Warinner C. Differential DNA preservation in archaeological dental calculus and dentin has implications for microbiome research. Society for American Archaeology. Washington D.C.

2017                Ozga AT, Nockerts R, Wilson, M, Gilby IC, Pusey A, Stone AC. Commensal and pathogenic microbiota and viruses from the oral cavity of deceased Gombe chimpanzees. International Society of Evolution, Medicine, and Public Health. Groningen, Netherlands.

2017                Ozga AT, Nieves-Colón MA, Nockerts R, Webster T, Wilson M, Gilby I, Pusey A, Stone AC. Chimpanzees of the past: Full mitochondrial genomes from Pan troglodytes schweinfurthii skeletons from Gombe National Park. American Association of Physical Anthropologists annual meeting, New Orleans, LA.

2016                Jeong C, Ozga AT, Witonsky D, Malstrom H, Jakobsson M, Lewis CM, Aldenderfer M, Di Rienzo A, Warinner C. Long-term genetic stability and a high altitutde East Asian origin for the peoples of the high valleys of the Himalayan arc. American Association of Physical Anthropologists annual meeting, Atlanta GA.

2015                Ozga AT, Sankaranarayanan K, Ozga A, Spicer P, Warinner C, Lewis Jr., CM. Implications of oral microbiome diversity among the Cheyenne & Arapaho of Oklahoma. Human Biology Association annual meeting. St Louis, MO.

2015                Sankaranarayanan K, Ozga AT, Spicer P, Warinner C, Lewis Jr., CM. Gut microbiome diversity among the Cheyenne & Arapaho Tribes of Oklahoma. Human Biology Association annual meeting. St Louis, MO.

2014                Lewis CM, Ozga AT, Warinner C. Human microbiomes and non-traditional molecular archaeology. American Association of Anthropological Genetics/American Association of Physical Anthropology Joint Symposium. Calgary, Alberta, Canada.

2013                Ozga AT, Tito RY, Lewis CM. 1% Human. American Anthropological Association annual meeting. Chicago, IL.

2013                Ozga AT, Tito RY, Lewis CM. Viromes and Anthropology. Human Biology Association annual meeting. Knoxville, TN

2011                Ozga AT, Tito RY, Obregon-Tito A, Warren D, Stephens L, Warren D. Analysis of TCF7L2, a candidate gene for type 2 diabetes, in Oklahoma American Indians. Human Biology Association Annual meeting. Minneapolis, MN.

2010                Tito RY, Obregon-Tito A, Ozga AT, Lewis CM. Human Microbiomes Past and Present. American Anthropological Association annual meeting. New Orleans, LA.

2010                Obregon-Tito A, Tito RY, Ozga AT, Lewis CM. Human Microbiomes and Engaging Indigenous Communities. American Anthropological Association annual meeting. New Orleans, LA.

2010                Tito RY, Ozga AT, Lewis CM. Human Microbiomes from Remote Native South American Communities. Human Microbiome Research Conference. St. Louis, MO.

2009                Ozga AT. Pain in the Back: Vertebral Arthritis in a Turn of the Century Midwestern Skeletal Sample. 67th Annual Plains Anthropological Conference. Norman, OK.

2007                Ozga AT, Cepon T, White B, Sullivan N. A Demographic Profile of Late 19th Early 20th Century Polish Citizens in the City of Milwaukee. Central States Anthropological Society. Minneapolis, MN.

Conference Posters:

2018                Ozga AT, Webster TH, Nieves-Colón MA, Fowler K, Siford R, Wilson Sayres

M, Nockerts R, Wilson M, Gilby I, Pusey A, Li Y, Hahn BH, Stone AC. Mitochondrial and exome diversity in Pan troglodytes schweinfurthii at Gombe National Park. Society for Molecular Biology and Evolution, Yokohama, Japan.

2017                Ozga AT, Nieves-Colón MA, Stone AC. Recovery of exomes and mitochondrial genomes from dental calculus. 27th International Society for Forensic Genetics Congress, Seoul, South Korea.

2017                Ozga AT, Nieves-Colón MA, Webster TH, Wilson Sayres M, Nockerts R, Wilson, M, Gilby IC, Pusey A, Stone AC. Short term reduction in Pan troglodytes schweinfurthii diversity at Gombe National Park. Society for Molecular Biology and Evolution, Austin, TX.

2016                Stone AC, Ozga AT, Nieves-Colón MA, Nockerts R, Webster T, Wilson-Sayres M, Wilson M, Gilby I, Pusey A, Marean C. The preservation of DNA from bone, dentin, and calculus from Gombe National Park and Pinnacle Point in Africa. International Symposium on Biomolecular Archaeology (ISBA7), Oxford, United Kingdom.

2016                Stone AC, Nieves-Colón MA, Ozga AT, Till CE, Fowler K, Nockerts R, Wilson M, Gilby I, Pusey A. The landscape of mitochondrial genetic diversity in chimpanzees from Gombe National Park and across the genus Pan. Society for Molecular Biology & Evolution, Queensland, Australia.

2016                Ozga AT, Nieves-Colón MA, Honap TP, Sankaranarayanan K, Hofman C, Milner G, Lewis Jr. CM, Stone AC, Warinner CW. Ancient dental calculus as a reservoir of whole human mitogenomes. American Association of Physical Anthropologists annual meeting, Atlanta GA.

2015                Nieves-Colón MA, Ozga AT, Honap TP, Pestle WJ, Warinner C, Stone AC. Comparison of aDNA yields from calculus and tooth roots in pre-Columbian skeletal remains. American Association of Physical Anthropologists annual meeting. St Louis, MO.

2007                White B, Ozga AT, Cepon T, Sullivan N: Dating and Analysis of Grave Goods/Cemetery Use in a Late 19th Early 20th Century Almshouse Cemetery. Society for American Archaeology annual meeting. Austin, TX.

2007                Cepon T, Ozga AT, White B, Sullivan N: An Analysis of Methods and Purposes of Post-mortem Examinations as Observed in a Pauper Cemetery. American Association of Physical Anthropologists. Philadelphia, PA.

2007                Ozga AT, Cepon T, White B, Sullivan N. The Prevalence of Vertebral and Peripheral Characteristics of DISH in a Late 19th Early 20th Almshouse Cemetery. American Association of Physical Anthropologists annual meeting. Philadelphia, PA.

2006                Devitt L, Cepon T, Ozga AT, White B, Sullivan N. Co-Author on a Poster: Demography of a Late 19th Early 20th Almshouse Cemetery. Midwest Bioarcheology and Forensic Anthropology Association. Springfield, IL.

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